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Article Details

  • Article Code : FIRAT-AKADEMI-9241-5555
  • Article Type : Araştırma Makalesi
  • Publication Number : 5A0176
  • Page Number : 170-178
  • Doi : 10.12739/NWSA.2022.17.4.5A0176
  • Abstract Reading : 892
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Issue Details

  • Year : 2022
  • Volume : 17
  • Issue : 4
  • Number of Articles Published : 15
  • Published Date : 1.10.2022

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Ecological Life Sciences

Serial Number : 5A
ISSN No. : 1308-7258
Release Interval (in a Year) : 4 Issues

EFFECTS OF PRESERVATION CONDITIONS ON DNA QUALITY TO BE USED IN PARASITIC STUDIES IN FISHERIES

Sibel DOĞAN 1 , Şükrü ÖNALAN2

Among the parasitic disease agents, Diplostomums are among the most common and highly pathogenic agents. In this study, DNA isolation and subsequent purity and concentration differences were investigated from parasite samples taken under different stock conditions. In the concentration differences, it was observed that the concentrations of the parasite samples kept at -20°C without buffer and the samples kept in 0.9% saline at -20°C were insignificantly higher (p<0.05). According to the results of the study, if the starting material is DNA, it has been observed that there is no problem in terms of DNA concentration if the tissue samples are kept at -20°C in a short time (3 days) without the need for a buffer solution.

Keywords
Fish, Fish Parasites, Diplostomum sp., DNA Isolation, Storage Conditions,

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Authors

Sibel DOĞAN (1) (Corresponding Author)

Fırat University
sbarata@firat.edu.tr | 0000-0003-4569-5435

Şükrü ÖNALAN (2)

sukruonalan@yandex.com | 0000-0003-0058-5232

Supporting Institution

:

Project Number

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References
[1] Gasser, R.B., (2006). Molecular tools advances, opportunities and prospects. Veterinary Parasitology, 136:69-89.

[2] Georgieva, S., Soldanova, M., Perez-del-Olmo, A., Dangel, D.R., c, Jilji Sitko, J., Bernd Sures, B., and Kostadinova, A., (2013). Molecular prospecting for European Diplostomum (Digenea: Diplostomidae) reveals cryptic diversity. International Journal for Parasitology, 43:57–72.

[3] McPherson, M.J. and Moller, S.G., (2000). The Basic. New York, Cromwell Press, 1-45.

[4] Prichard, R. and Tait, A., (2001). The role of molecular biology in veterinary parasitology. Veterinary Parasitology, 98:169-194.

[5] Monis, P.T., Andrews, R.H. and Saint, C.P., (2002). Molecular biology techniques in parasite ecology. International Journal of Parasitology, 32:551-562.

[6] Klokouzas, A., Shahi, S., Hladky, S.B., Barrand, M.A., and Van Veen, H.W., (2003). ABC transporters and drug resistance in parasitic protozoa. International Journal of Antimicrobial Agent, 22:301-317.

[7] Hodgkinson, J.E., (2006). Molecular diagnosis and equine parasitology. Veterinary Parasitology, 136:109-16.

[8] Conkle, M.T., (1980). Amount and Distribution of Isozyme Variation in Various Conifer Species. In:Proceedings of the 7th Meeting, Canadian For, Ser., 109-117.

[9] Nelson, K. and Soule, M., (1987). Genetical conservation of exploited fishes. Population Genetics and Fishery Managment, University of Washington Press, 420, Seattle, Eds. Ryman, N. and Utter, F.

[10] Prichard, R., (1997). Application of molecular biology in veterinary parasitology. Veterinary Parasitology, 71:155175.

[11] Turner, P.C., McLennan, A.G., Bates, A.D., White, M.R.H., and Konuk, M., (2004). Moleküler biyoloji. Nobel Yayın evi. ISBN: 975-591-596-6.

[12] Arı, Ş., (2003). DNA’nın Polimeraz Zincir Reaksiyonuyla Çoğaltılması, Moleküler Biyolojide Kullanılan Yöntemler. Nobel Tıp Kitabevleri, İstanbul, ss:101-120, Ed. Temizkan, G. ve Arda, N.

[13] Lo, Y.M., (2001). Circulating nucleic acids in plasma and serum, an overview, Ann N.Y. Acad SCİ., 945:1-7. doi: 10.1111/j.1749-6632.2001.tb03858.x.

[14] Sarıkaya, A.T., (2008). DNA’nın İzolasyonu ve Analizi, Moleküler Biyolojide Kullanılan Yöntemler, ss:55-80, Ed. Temizkan, G. ve Arda, N.

[15] Körogˆlu, M., (2017). Sampling and DNA Isolation in Microbiota Studies. Journal of Biotechnology and Strategic Health Research, 1:50-55.

[16] Bush, A.O., Lafferty, K.D., Lotz, J.M., and Shostak, A.W., (1997). Parasitology meets ecology on its own terms, revised at. Margolis Journal of Parasitology, 83(4):575-583.

[17] Ekingen, G., (1983). Tatlı Su Balık Parazitleri, Fırat Üniversitesi Su Ürünleri Yüksek Okulu F.Ü. Basımevi, Elazığ.

[18] Markevic, A.P., (1951). Parasitic fauna of freshwater fish of the Ukrainian SSR. Israel program for scientific translations, Jerusalem, 95-255s.

[19] Bykhouskaya-Poulovskaya, I.E., (1964). Key to parasites of freshwater fishes of the USSR I-II-III Israel program for scientific translation, Jerusalem.

[20] Tiğin, Y., Burgu, A., Doğanay, A., Öge, H. ve Öge, S., (1992). Balık parazitleri. Türkiye Parazitoloji Dergisi, 16(1):103-119.

[21] Shigin, A.A., (1986). Trematodes in the Fauna of the USSSR: The Genus Diplostomum, Metacercariae, Nauka, Moscow, (In Russian).

[22] Shigin, A.A., (1993). Trematodes of the Fauna of Russia and Neighbouring Regions. Genus Diplostomum. Adults, Nauka, Moscow, 1993 (In Russian).

[23] Galazzo, D.E., Dayanandan, S., Marcogliese, D.J., and McLaughlin, J.D., (2002). Molecular systematics of some North American species of Diplostomum (Digenea) based on rDNA sequence data and comparisons with European congeners, Canadian Journal of Zoology, 80(12):2207–2217, https://doi.org/10.1139/z02-198.

[24] Locke, S.A., Al-Nasiri, F.S., Caffara, M., Drago, F., Kalbe, M., Lapierre, A.R., McLaughlin, J.D., Nie, P., Overstreet, R.M., Geza Souza, T.R., Takemoto, R.M., and Marcogliese, D.J., (2015). Diversity, specificity and speciation in larval Diplostomidae (Platyhelminthes: Digenea) in the eyes of freshwater fish, as revealed by DNA barcodes. International Journal for Parasitology, International Journal for Parasitology, (45):841–855.

[25] Hoogendoorn, C., Smit, N.J., and Kudlai, O., (2020). Resolution of the identity of three species of Diplostomum (Digenea: Diplostomidae) parasitising freshwater fishes in South Africa, combining molecular and morphological evidence. International Journal for Parasitology, ParasitesWildl.11:50–61,

[26] https://doi.org/10.1016/j.ijppaw.2019.12.003.

[27] Chappell, L.H., Hardie, L.J., and Secombes, C.J., (1994). Diplostomiasis: the disease and hostparasite interactions (eds. Pike, A.W. ve Lewis, J.W.) Parasitic Diseases. Samara Publishing Ltd, London.

[28] Karvonen, A. and Marcogliese, D.J., (2020). Diplostomiasis (Diplostomum spathaceum and related species), in: P.T.K. Woo, J.A. Leong, K. Buchmann (Eds.), Climate Change and Infectious Fish Diseases, CABI, Wallingford, pp:434–456.

[29] Lebedeva, D.I., Popov, I.Y., Yakovleva, G.A., Zaicev, D.O., Bugmyrin, S.V., and Makhrov, A.A., (2022). No strict host specificity: Brain metacercariae Diplostomum petromyzifluviatilis Müller (Diesing, 1850) are conspecific with Diplostomum sp. Lineage 4 of Blasco-Costa et al. (2014). Parasitology International, https://doi.org/10.1016/j.parint.2022.102654.

[30] Buchmann, K. and Uldal, A., (1994). Effects of eyefluke infections on growth of rainbow trout (Oncorhynchus mykiss) in a mariculture system. Bulletin of the European Association of Fish Pathologists, 14(3):104–107.

[31] Karvonen, A., Kirsi, S., Hudson, P., and Valtonen, E., (2004). Patterns of cercarial production from Diplostomum spathaceum: Terminal investment or bet hedging? Parasitology, 129(1):87. https://doi. org/10.1017/S0031182004005281.

[32] Marcogliese, D.J., Dumont, P., Gendron, A.D., Mailhot, Y., Bergeron, E., and McLaughlin, J.D., (2001). Spatial and temporal variation in abundance of Diplostomum spp. in walleye (Stizostedion vitreum) and white suckers (Catostomus commersoni) from the St. Lawrence River. Canadian Journal of Zoology, 79(3):355–369. https://doi.org/10.1139/ cjz-79-3-355.

[33] McCloughlin, T., (2016). A sight for sore eyes: Diplostomum and Tylodelphys in the eyes of fish. Iranian Journal of Parasitology, 11(3):429–430.

[34] Önalan, Ş., Adali, S. ve Taş, A., (2019). Farklı Metotlar Kullanılarak Elde Edilen Aynı Miktar Bakteriyel DNA’lar Arasındaki Konsantrasyon Farklılıklarının Belirlenmesi. Journal of Anatolian Environmental and Animal Sciences, 4(3):422-427. Doi: https://doi.org/10.35229/jaes.626493.

[35] Doğan Barata, S., Dörücü, M., and Gürses, M., (2022). Identification and Molecular Investigation of Diplostomum in Capoeta umbla Caught from Freshwater Sources, Turkey Genetics of Aquatic Organisms 6(2), GA454 http://doi.org/10.4194/GA454.

[36] Barata, S. ve Dörücü, M., (2014). Karakaya Baraj Gölü Kömürhan Bölgesinden yakalanan bazı balıklarda endohelmintlerin araştırılması. Fırat Üniversitesi, Fen Bilimleri Dergisi Fırat University Journal of Science, 26(1):59-68.

[37] Désilets, H.D., Locke, S.A., McLaughlin, J.D., and Marcogliese, D.J., (2013). Community structure of Diplostomum spp. (Digenea: Diplostomidae) in eyes of fish: Main determinants and potential interspecific interactions, International Journal for Parasitology, 43:929–939.

[38] Locke, S.A., McLaughlin, J.D., Dayanandan, S. ve Marcogliese, D. J., (2010). Diversity and specificity in Diplostomum spp. metacercariae in freshwater fishes revealed by cytochrome c oxidase I and internal transcribed spacer sequences. International Journal for Parasitology, (40):333–343.

[39] Achatz, T.J., Martens, J.R., Kostadinova, A., Pulis, E.E., Orlofske, S.A., Bell, J.A., Fecchio, A., Oyarzún-Ruiz, P., Syrota, Y.Y., and Tkach, V.V., (2022). International Journal for Parasitology, 52(1):47-63.

[40] Perez-del-Olmo, A., Georgieva, S., Pula, H., and Kostadinova, A., (2014). Molecular and morphological evidence for threespecies of Diplostomum (Digenea: Diplostomidae), parasites of fishes and fish-eating birds in Spain, Parasites & Vectors, 7:502.